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The dataset generation failed
Error code:   DatasetGenerationError
Exception:    CastError
Message:      Couldn't cast
document_id: string
document_content: string
parent_id: string
metadata: null
task_split: string
passage_qrels: list<item: struct<id: string, label: double>>
  child 0, item: struct<id: string, label: double>
      child 0, id: string
      child 1, label: double
full_document_qrels: list<item: struct<id: string, label: double>>
  child 0, item: struct<id: string, label: double>
      child 0, id: string
      child 1, label: double
instruction: string
use_max_p: bool
query_content: string
query_id: string
passage_binary_qrels: null
to
{'query_id': Value('string'), 'query_content': Value('string'), 'instruction': Value('string'), 'passage_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'passage_binary_qrels': Value('null'), 'full_document_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'use_max_p': Value('bool'), 'metadata': Value('string'), 'task_split': Value('string')}
because column names don't match
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
                  for key, table in generator:
                                    ^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 260, in _generate_tables
                  self._cast_table(pa_table, json_field_paths=json_field_paths),
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 120, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              document_id: string
              document_content: string
              parent_id: string
              metadata: null
              task_split: string
              passage_qrels: list<item: struct<id: string, label: double>>
                child 0, item: struct<id: string, label: double>
                    child 0, id: string
                    child 1, label: double
              full_document_qrels: list<item: struct<id: string, label: double>>
                child 0, item: struct<id: string, label: double>
                    child 0, id: string
                    child 1, label: double
              instruction: string
              use_max_p: bool
              query_content: string
              query_id: string
              passage_binary_qrels: null
              to
              {'query_id': Value('string'), 'query_content': Value('string'), 'instruction': Value('string'), 'passage_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'passage_binary_qrels': Value('null'), 'full_document_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'use_max_p': Value('bool'), 'metadata': Value('string'), 'task_split': Value('string')}
              because column names don't match
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1922, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

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query_id
string
query_content
string
instruction
string
passage_qrels
list
passage_binary_qrels
null
full_document_qrels
list
use_max_p
bool
metadata
string
task_split
string
2022-15
An 8-year-old boy is brought to the clinic by his parents because of weakness and difficulty of standing up from a sitting position. The mother is healthy but had a brother who died in his 20th after being disabled and using wheelchairs in the last few years of his life. Physical examination shows 3/5 lower extremity muscle strength and enlarged calf muscles. The other physical examination and vital signs are unremarkable. Muscle biopsy showed absence of dystrophin protein. The patient is diagnosed with DMD.
Given a patient's medical history, find clinical trials that are relevant to them
[ { "id": "NCT00000524:0", "label": 0 }, { "id": "NCT00000619:0", "label": 0 }, { "id": "NCT00000619:1", "label": 0 }, { "id": "NCT00001165:0", "label": 0 }, { "id": "NCT00001165:1", "label": 0 }, { "id": "NCT00001332:0", "label": 0 }, { "id"...
null
[ { "id": "NCT00000524", "label": 0 }, { "id": "NCT00000619", "label": 0 }, { "id": "NCT00001165", "label": 0 }, { "id": "NCT00001332", "label": 0 }, { "id": "NCT00001421", "label": 0 }, { "id": "NCT00001431", "label": 0 }, { "id": "NCT000014...
true
{"year": "2022", "query_with_instruction": "Given a patient's medical history, find clinical trials that are relevant to them\nAn 8-year-old boy is brought to the clinic by his parents because of weakness and difficulty of standing up from a sitting position. The mother is healthy but had a brother who died in his 20th after being disabled and using wheelchairs in the last few years of his life. Physical examination shows 3/5 lower extremity muscle strength and enlarged calf muscles. The other physical examination and vital signs are unremarkable. Muscle biopsy showed absence of dystrophin protein. The patient is diagnosed with DMD."}
clinical_trial
2021-16
79 yo F with multifactorial chronic hypoxemia and dyspnea thought due to diastolic CHF, pulmonary hypertension thought secondary to a chronic ASD and COPD on 5L home oxygen admitted with complaints of worsening shortness of breath. Cardiology consult recommended a right heart cath for evaluation of response to sildenafil but the patient refused. Pulmonary consult recommended an empiric, compassionate sildenafil trial due to severe dyspneic symptomology preventing outpatient living, and the patient tolerated an inpatient trial without hypotension. Patient to f/u with pulmonology to start sildenifil chronically as outpatient as prior authorization is obtained.Past Medical History:- Atrial septal defect repair [**6-17**] complicated by sinus arrest with PPM placement.- Diastolic CHF, estimated dry weight of 94kg- Pulm HTN (RSVP 75 in [**11-24**]) thought secondary to longstanding ASD- COPD on home O2 (5L NC) with baseline saturation high 80's to low 90's on this therapy.- OSA, not CPAP compliant- Mild mitral regurgitation- Microcytic anemia- Hypothyroidism- S/p APPY, s/p CCY ('[**33**])- Gallstone pancreatitis s/p ERCP, sphincterotomy- Elevated alk phos secondary to amiodarone
Given a patient's medical history, find clinical trials that are relevant to them
[ { "id": "NCT00032643:0", "label": 0 }, { "id": "NCT00032643:1", "label": 0 }, { "id": "NCT00032643:2", "label": 0 }, { "id": "NCT00037973:0", "label": 2 }, { "id": "NCT00037973:1", "label": 2 }, { "id": "NCT00041938:0", "label": 0 }, { "id"...
null
[ { "id": "NCT00032643", "label": 0 }, { "id": "NCT00037973", "label": 2 }, { "id": "NCT00041938", "label": 0 }, { "id": "NCT00043836", "label": 1 }, { "id": "NCT00098072", "label": 0 }, { "id": "NCT00098488", "label": 0 }, { "id": "NCT001024...
true
{"year": "2021", "query_with_instruction": "Given a patient's medical history, find clinical trials that are relevant to them\n79 yo F with multifactorial chronic hypoxemia and dyspnea thought due to diastolic CHF, pulmonary hypertension thought secondary to a chronic ASD and COPD on 5L home oxygen admitted with complaints of worsening shortness of breath. Cardiology consult recommended a right heart cath for evaluation of response to sildenafil but the patient refused. Pulmonary consult recommended an empiric, compassionate sildenafil trial due to severe dyspneic symptomology preventing outpatient living, and the patient tolerated an inpatient trial without hypotension. Patient to f/u with pulmonology to start sildenifil chronically as outpatient as prior authorization is obtained.Past Medical History:- Atrial septal defect repair [**6-17**] complicated by sinus arrest with PPM placement.- Diastolic CHF, estimated dry weight of 94kg- Pulm HTN (RSVP 75 in [**11-24**]) thought secondary to longstanding ASD- COPD on home O2 (5L NC) with baseline saturation high 80's to low 90's on this therapy.- OSA, not CPAP compliant- Mild mitral regurgitation- Microcytic anemia- Hypothyroidism- S/p APPY, s/p CCY ('[**33**])- Gallstone pancreatitis s/p ERCP, sphincterotomy- Elevated alk phos secondary to amiodarone"}
clinical_trial
2021-4
"This is a 44 year old female with PMH of PCOS, Obesity, HTN who presented with symptoms of cholecys(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000776:0","label":0.0},{"id":"NCT00000776:1","label":0.0},{"id":"NCT00000776:2","label"(...TRUNCATED)
null
[{"id":"NCT00000776","label":0.0},{"id":"NCT00001301","label":1.0},{"id":"NCT00001539","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2022-32
"A 30-year-old man who is a computer scientist came to the clinic with the lab result stating azoosp(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000576:0","label":0.0},{"id":"NCT00000576:1","label":0.0},{"id":"NCT00000585:0","label"(...TRUNCATED)
null
[{"id":"NCT00000576","label":0.0},{"id":"NCT00000585","label":0.0},{"id":"NCT00000653","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2022\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-39
"A 3-day-old Asian female infant presents with jaundice that started a day ago. She was born at 38w3(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000910:0","label":2.0},{"id":"NCT00001383:0","label":0.0},{"id":"NCT00001383:1","label"(...TRUNCATED)
null
[{"id":"NCT00000910","label":2.0},{"id":"NCT00001383","label":0.0},{"id":"NCT00001386","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-35
"The patient is a 15 year old girl with the history of recurrent bilateral headache. The attacks com(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000862:0","label":0.0},{"id":"NCT00000862:1","label":0.0},{"id":"NCT00000862:2","label"(...TRUNCATED)
null
[{"id":"NCT00000862","label":0.0},{"id":"NCT00000910","label":0.0},{"id":"NCT00001598","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-32
"A 17 year old boy complains of vomiting, non-bloody diarrhea, abdominal pain, fever, chills and los(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00001237:0","label":0.0},{"id":"NCT00001237:1","label":0.0},{"id":"NCT00001237:2","label"(...TRUNCATED)
null
[{"id":"NCT00001237","label":0.0},{"id":"NCT00002774","label":0.0},{"id":"NCT00003126","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-20
"A 35-year-old woman presents with history of acne and mild hirsutism. The primary evaluation reveal(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000910:0","label":0.0},{"id":"NCT00001621:0","label":0.0},{"id":"NCT00001860:0","label"(...TRUNCATED)
null
[{"id":"NCT00000910","label":0.0},{"id":"NCT00001621","label":0.0},{"id":"NCT00001860","label":1.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2022-47
"A 41-year-old woman comes to the dermatology clinic complaining of facial redness, especially on he(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000115:0","label":0.0},{"id":"NCT00000115:1","label":0.0},{"id":"NCT00000123:0","label"(...TRUNCATED)
null
[{"id":"NCT00000115","label":0.0},{"id":"NCT00000123","label":0.0},{"id":"NCT00000125","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2022\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-15
"70 year-old woman with a history of CAD recently noted abdominal mass who presents with fevers/rigo(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00001730:0","label":0.0},{"id":"NCT00001730:1","label":0.0},{"id":"NCT00001730:2","label"(...TRUNCATED)
null
[{"id":"NCT00001730","label":0.0},{"id":"NCT00003049","label":2.0},{"id":"NCT00003118","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
End of preview.

NanoCrumb Dataset

A curated subset of the Crumb retrieval dataset, designed for rapid experimentation and evaluation of information retrieval systems.

Dataset Summary

NanoCrumb distills the large Crumb dataset (10.5 GB, 6.36M rows) into a manageable benchmark while maintaining task diversity across 8 different retrieval domains.

  • Total Size: ~125 MB (JSONL format)
  • Queries: 400 (50 per task split)
  • Documents: 30,040 unique passages
  • Query-Document Pairs: 31,754
  • Configs: 8 task-specific configs

Configs (Task Splits)

Each config represents a different retrieval domain:

Config Name Queries Documents Docs/Query (avg) Description
clinical_trial 50 22,251 464 Match patients to clinical trials
paper_retrieval 50 4,402 102 Find relevant academic papers
set_operation_entity_retrieval 50 1,533 31 Entity-based retrieval
code_retrieval 50 1,206 24 Find relevant code snippets
tip_of_the_tongue 50 363 7 Recall items from vague descriptions
stack_exchange 50 125 3 Find relevant Q&A posts
legal_qa 50 86 2 Legal question answering
theorem_retrieval 50 74 2 Find mathematical theorems

Dataset Structure

Each config contains three splits:

queries

  • query_id: Unique query identifier (string)
  • query_content: The query text (string)
  • instruction: Task-specific instructions (string)
  • passage_qrels: List of relevant passages with graded relevance scores (list)
  • task_split: Task domain name (string)
  • metadata: Additional task-specific information (string)
  • use_max_p: Boolean flag for MaxP aggregation (bool)

documents

  • document_id: Unique document identifier (string)
  • document_content: The passage text (string)
  • parent_id: Links passages to source documents (string)
  • task_split: Task domain name (string)
  • metadata: Document metadata (string)

qrels

  • query_id: Query identifier (string)
  • document_id: Document identifier (string)
  • relevance_score: Graded relevance 0.0-2.0 (float)
  • binary_relevance: Binary relevance 0 or 1 (int)
  • task_split: Task domain name (string)

Usage

from datasets import load_dataset

# Load a specific config (task split)
clinical_data = load_dataset("YOUR_USERNAME/nanocrumb", "clinical_trial")

# Access the splits
queries = clinical_data['queries']
documents = clinical_data['documents']
qrels = clinical_data['qrels']

# Load all configs
all_configs = [
    "clinical_trial", "code_retrieval", "legal_qa", "paper_retrieval",
    "set_operation_entity_retrieval", "stack_exchange",
    "theorem_retrieval", "tip_of_the_tongue"
]

for config_name in all_configs:
    data = load_dataset("YOUR_USERNAME/nanocrumb", config_name)
    print(f"{config_name}: {len(data['queries'])} queries")

Sampling Methodology

For each task split:

  1. Query Selection: Randomly sampled 50 queries from evaluation set (seed=42)
  2. Document Selection:
    • Include ALL positive documents (binary_relevance=1)
    • Fill remainder with hard negatives (relevance=0) to reach ~100 docs per query
    • Target: ~5,000 documents per task split
  3. Deduplication: Documents shared across queries are deduplicated within each config

Use Cases

  • 🚀 Rapid prototyping of retrieval models
  • 🧪 Quick benchmarking without downloading large datasets
  • 📚 Educational purposes for learning IR techniques
  • 🔬 Ablation studies across diverse domains

Citation

If you use NanoCrumb, please cite the original Crumb dataset:

@misc{crumb2024,
  title={Crumb: A Comprehensive Retrieval Benchmark},
  author={[Original Crumb Authors]},
  year={2024},
  url={https://huggingface.co/datasets/jfkback/crumb}
}

License

This dataset inherits the license from the original Crumb dataset.

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